Methods: Genomic DNA was isolated from venous blood obtained from woman referred to the Department of Gynecology of Niigata University Medical and Dental Hospital (term birth: 71, preterm birth: 51). The following SNPs were determined with Invader Assay: FcγRIIA-131R/H, FcγRIIB-232I/T, FcγRIIIA-158V/F, FcγRIIIB-NA1/NA2, FcαR 324A/G, FcαR 56T/C, TNFRI -383A/C, TNFRII+587T/G, +694G/A, IL-1α+4845G/T, IL-1β-31C/T, +3954C/T, IL-1RA+2018T/C, TNFα-863C/A, -857C/T, IL-6-572G/C, IL-2-330T/G, IL-4-590C/T, -34C/T, IL-10-1087G/A, -824C/T. Within 5 days after labour, clinical periodontal parameters were evaluated and the presence and quantity of Porphyromonas gingivalis from subgingival plaque were determined using real-time PCR. Results: The association between preterm birth and any SNPs were not statistically significant. Clinical variables of periodontal disease were significantly different between genotypes of FcγRIIA-131R/H, FcγRIIIB-NA1/NA2, and IL-1α+4845G/T. Positive subjects with Porphyromonas gingivalis in subgingival plaque, TNFα-863C/A polymorphism was associated with preterm birth (P=0.04). Conclusions: Maternal periodontitis and/or the presence of Porphyromonas gingivalis in subgingival plaque do not necessarily cause preterm labour. TNFα-863C/A genotype might be a more specific risk marker of preterm labour for pregnant woman with Porphyromonas gingivalis .