Methods: A novel RFLP-PCR method was developed to identify alleles of the CT60 in DNA samples from healthy volunteers and a panel of DNA samples from patients with aggressive periodontitis. Differences in the distribution of genotypes and alleles between control and disease groups were analysed by Chi-square analysis. The SNP analysis was validated in 2 independent panels of control DNA samples; the distribution of CT60 genotypes in these samples was in Hardy Weinberg equilibrium and frequencies consistent with previously published data.
Results: In the pooled control sample (n=132) the A/A, A/G and G/G CT60 genotypes had frequencies of 18.9%, 52.3% and 28.8% respectively and in the aggressive periodontitis patients (n=79) the frequencies were 20.2%, 53.2% and 26.6% respectively. The differences between the genotype distributions were not significantly different (P>0.5) and there were no significant differences in the carriage of the G allele (OR=1.09; P>0.5).
Conclusion: The results of this study suggest that the CT60 SNP does not have a major influence on susceptibility to aggressive periodontitis.